Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015939200.1_cds_XP_016483882.1_74951
CDS Infomation

[gene=LOC107804491] [db_xref=GeneID:107804491] [protein=26S proteasome non-ATPase regulatory subunit 1 homolog A-like] [protein_id=XP_016483882.1] [location=join(30482..30633,33172..33235,33350..33455,33926..34037,34150..34318,34989..35464,35557..35692,35791..36039,36130..36350,37696..37954,38194..38426,38507..38996,39168..39491)] [gbkey=CDS]
Sequence

ATGGCGACGGCTGCAACGATGGTGAGTTCGGCGGGTGGTTTATTGGCGATGCTGAACGAA
TCCCACCCACAGTTGAAACTCCACGCGCTCTCAAATCTCAACGCCTTTGTTGATTACTTT
TGGCCTGAGATCTCTACCTCTGTCCCTGTCATTGAAAGCTTGTACGAGGATGAAGAGTTT
GATCAAAGACAACTAGCTGCATTAGTTGCTTCAAAGGTTTTCTATCATTTGGGTGAACAT
AATGACTCATTATCCTATGCCCTTGGAGCTGGCCCTCTCTTTGATGTTTCTGAGGATACT
GACTATGTTCATACAGTTCTCGCTAAAGCCCTGGATGAGTATGCAAGCCATAAGACTAAG
GCAGCTGAGTCAAATGATGAAGCCACAAAGGTGGACCCTAGGCTGGAGGCTATTGTGGAG
AGAATGCTTGATAAGTGTATAGTGGATGGCAAATATCAGCAAGCCATTGGCATGGCCATT
GAATGCCGAAGGCTGGATAAGGTTGCCGAAGCAATTGTTAGCAGTGATAACGTTGATGCC
ACTCTAGCATATTGCAGTAATGTTTCCCATAACTTCGTCAATCGTAGAGAATATCGAAGT
GAGGTGCTTCGTCTTCTTGTCGATGTGTATGAGAAGTCACCATCTCCAAACTATTTGAGC
ATGTGCCAGTGGCTTATGTTTTTGGATAAACCAGAGACTGTAGCAAGCATATTGGAGAAG
CTATTAAGATCAGAAAATAAAGATGATGCTCTATTGGCATTTCAAATAGCTTTTGACCTT
GTAGAGAACGAGCACCAAGCTTTTCTTTTGAGGGTTAGGGACCGGCTTTCCAGCCCAAAC
CTACAACCTTCAGAGCCGGCACAGCCGTTACCTGCGGATTCTGATCGAGCACCGACTGAA
GATGCAGAAGCTTCAGAGGATGTTCCATTGTTAGAAGAAAGCAGACCTTCAGGTGGGACG
TTAACAACTGCGGATCCAAAAGAAGCTATGTATGCTGAAAGGTTGGGAAAACTAAAAGGG
ATTCTATCAGGGGAGACCTCAATACAGTTGACCTTGCAATTCTTATACAGCCATAACAAG
TCAGATCTCCTTATTCTTAAAACAATAAAGCAGTCTGTTGAGATGAGAAATAGTGTGTGT
CACAGTGCAACAATATATGCGAATGCGATCATGCATGCCGGAACGACTGTGGATACATTC
CTTAGGGAGAACCTGGACTGGCTAAGCCGTGCAACAAATTGGGCTAAATTCAGTGCGACA
GCTGGACTGGGTGTTATCCACAGTGGCCATTTGCAGCAGGGGAGATCACTTATGGCACCT
TACTTACCTCAAGGTGGAGCTGGTGGAGGTGGTAGTCCATATTCAGAAGGTGGTGCCTTG
TATGCTCTTGGTTTAATTCATGCAAATCATGGGGAGGGTATCAAACAGTTTCTTCGTGAT
AGTCTACGTAGTACAAATGTCGAGGTTATTCAGCATGGTGCCTGCTTAGGACTTGGGTTG
GCTGCTCTAGGAACCGCTGATGAAGACATTTATGATGACATTAAAAACGTCCTATATACT
GACAGTGCCGTTGCTGGAGAGGCTGCTGGTATTGGTATGGGTTTATTGATGGTTGGAACT
GCAAGTGAGAAGGCAGGTGAGATGCTTGCTTATGCTCATGAGACGCAACACGAGAAGATA
ATCAGGGGTTTGGCACTAGGTATAGCTCTCACAGTCTACGGAAGGGAGGAAGAAGCCGAT
ACACTGATTGAACAAATGACTAGGGATCAAGACCCTATATTGCGTTATGGTGGAATGTAT
GCTTTAGCATTGGCTTACAGAGGAACTGCGAATAATAAAGCTATCCGTCAGTTGCTGCAT
TTTGCTGTATCAGATGTTAGTGATGATGTCCGCCGGACAGCAGTTTTGGCACTTGGATTT
GTTATGTATTCTGAGCCAGAGCAGATGCCTCGTATTGTATCGTTGTTATCAGAGTCTTAC
AATCCACATGTTCGATATGGTGCGGCTATGGCAGTAGGCATTTCTTGTGCAGGTACTGGT
CTGAGTGAGGCCATCTCATTGTTGGAGCCTTTGACATCAGATGTGGTTGATTTTGTACGT
CAAGGTGCTCTCATAGCGATGGCCATGGTGATGGTCCAGATAAGTGAAGCTAGTGATTCC
CGCGTTGGTGCCTTCAGGCGACAACTGGAGAAAATTGTCCTAGATAAGCATGAAGATACC
ATGAGTAAAATGGGTGCAATTTTGGCCTCTGGTATTCTTGATGCTGGTGGAAGAAACGTG
ACAATCAAGTTACTTTCAAAGACTAAACATGACAAAATTACAGCAGTCGTTGGACTAGCT
GTTTTTAGTCAGTTTTGGTATTGGTATCCACTTATATATTTCGTTAGCTTAGCATTCTCA
CCAACAGCCTTGATTGGTCTCAATTATGACCTAAAAGTGCCAAAGTTCGAGTTTGTATCA
CACGCTAAGCCCTCACTATTTGAGTATCCTAAGCCAACCACTGTAGCCACCACAACTTCT
GCTGTGAAACTTCCCACAGCTGTTTTATCAACATCGGCTAGGGCTAAGGCAAGGGCTAGC
AAGAAAGAGGCTGAGAAAGCCATTGCCGAGAAGGCAGCTGGAACAGAGTCATCTTCTGGT
GCACCAAGTTCTGGGGAGTCCATGCAGGTGGATACTCCAGCGGAGAAGAAAAATGAACCA
GAGCCATCATTTGAGATGTTGACCAACCCTGCTAGGGTGGTTCCAGCTCAGGAGAAATAC
ATAAAGTTTTTGGAAGAAAGCAGATATGTGCCAGTTAAATCATCACCTTCTGGATTTGTG
CTTCTGAGAGATCTACGTCCTGATGAACCTGAAATATTGTCCCTCACTGATGCACCCTCG
TCAACTGCATCCAGCACTGGTGGTGGATCAACTGGACAACAGGCCCCGGCATCAGCAATG
GCTGTTGATGAGGAGCCTCAGCCACCACCGGCATTTGAGTACACATCGTGA

Peptide Sequence

PEP ID

XP_016483882.1
PEP Infomation

PREDICTED: 26S proteasome non-ATPase regulatory subunit 1 homolog A-like [Nicotiana tabacum]
Sequence

MATAATMVSSAGGLLAMLNESHPQLKLHALSNLNAFVDYFWPEISTSVPVIESLYEDEEF
DQRQLAALVASKVFYHLGEHNDSLSYALGAGPLFDVSEDTDYVHTVLAKALDEYASHKTK
AAESNDEATKVDPRLEAIVERMLDKCIVDGKYQQAIGMAIECRRLDKVAEAIVSSDNVDA
TLAYCSNVSHNFVNRREYRSEVLRLLVDVYEKSPSPNYLSMCQWLMFLDKPETVASILEK
LLRSENKDDALLAFQIAFDLVENEHQAFLLRVRDRLSSPNLQPSEPAQPLPADSDRAPTE
DAEASEDVPLLEESRPSGGTLTTADPKEAMYAERLGKLKGILSGETSIQLTLQFLYSHNK
SDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSAT
AGLGVIHSGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRD
SLRSTNVEVIQHGACLGLGLAALGTADEDIYDDIKNVLYTDSAVAGEAAGIGMGLLMVGT
ASEKAGEMLAYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMY
ALALAYRGTANNKAIRQLLHFAVSDVSDDVRRTAVLALGFVMYSEPEQMPRIVSLLSESY
NPHVRYGAAMAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQISEASDS
RVGAFRRQLEKIVLDKHEDTMSKMGAILASGILDAGGRNVTIKLLSKTKHDKITAVVGLA
VFSQFWYWYPLIYFVSLAFSPTALIGLNYDLKVPKFEFVSHAKPSLFEYPKPTTVATTTS
AVKLPTAVLSTSARAKARASKKEAEKAIAEKAAGTESSSGAPSSGESMQVDTPAEKKNEP
EPSFEMLTNPARVVPAQEKYIKFLEESRYVPVKSSPSGFVLLRDLRPDEPEILSLTDAPS
STASSTGGGSTGQQAPASAMAVDEEPQPPPAFEYTS

Transcript Sequence

Gene sequence data has not been registered.